Melonet DB
for functional genomics research of muskmelon
gene information :
[Last update: 28th, Oct, 2023]
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Harukei-3 ver1.41
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Dotplot (Harukei-3 vs DHL92)
Expression atlas
GO analysis
Blast+
Short DNA mapper
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Clustalw (fasta input)
Primer finder
Tm calculation
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ClustalW alignment
for fasta
query (input):
! Enter DNA or protein amino acid sequences like below. For trial, just click "search" button. >seq1 ATGGAGAGAATTTCACAAAAGGAACATGTTTTAGTTGATTATGGTCCACAAAGATCTTTTGAGGGTTCACCAAGTGATATGGACATGGATTTTAACGATGTTTTCGGAGGTCCACCGAGGCGATTTTCAGTACAAGAAGCAAGAACAAGGCACAGTTTCAATGATTCAGTAGAATCTGAAGAGGATTCAGCAGGTGTATCGCGAAATTCGTGGAATGGATTC >seq2[rc] GACCAATCCATTCCACCCCTTTCGCGATACACCTGCTGAATCCTCTTCAGATTCTACTGAATCTAAGAAACTGTGCCTTGTTCTTGCTACTTGTACTGAAAATCGCCTCGGTGGACCTGCGAAAACATCGTTAAAATCCATGTCCATATCACTTGGTCAACCCTCAAAAGATCTTTGTGGACCATAATCTACTAAAACATGTTCCTTTTGTGCAATTCTCTCCAT >seq3 ATGGAGAACAACAACAGTGAATTGCACAAAAGGACAAAGATCTTTTGAGGGTTGACCAAGTGATATGGACATGGATTTTAACGATGTTTTCGCAGGTCCACCGAGGCGATTTTCAGTACAAGTAGCAAGAATCTGAAGAGGATTCAGCAGGTGTATCTGGAAAGGGGTGGAATGGATTC
Method:
forward strand
reverse complement strand
Alignment setting:
Fast (score=absolute, gapopen=20, gapext=0.50)
Fast (score=absolute, gapopen=10, gapext=0.10)
Fast (score=absolute, gapopen=5, gapext=0.05)
Fast (score=absolute, gapopen=1, gapext=0.01)
Fast (score=percent, gapopen=20, gapext=0.50)
Fast (score=percent, gapopen=10, gapext=0.10)
Fast (score=percent, gapopen=5, gapext=0.05)
Fast (score=percent, gapopen=1, gapext=0.01)
Slow (gapopen=20, gapext=0.50)
Slow (gapopen=10, gapext=0.10)
Slow (gapopen=5, gapext=0.05)
Slow (gapopen=1, gapext=0.01)
[! Result will be shown below]
